PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.050160.8
Common NameCsa_7G428890, LOC101202980
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 419aa    MW: 46307.2 Da    PI: 8.1125
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.050160.8genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.4e-13354398655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el P        K s a++Le+AveYIk Lq
  Cucsa.050160.8 354 SIAERMRRTRISERIKKLQELFPDM-----DKTSTADMLELAVEYIKGLQ 398
                     689*********************6.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.272348397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-14351411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.73E-11352402No hitNo description
Gene3DG3DSA:4.10.280.107.2E-13353408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-12354403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-10354398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MSLLYSTNFK FSNDEMKKYP DFMDCDSTNN HHSQQEHNNS GGLMRYCSAP TSLFASLVDG  60
TEGFNSSNNG GGTREDYRFI RSSSPEVEVI LSRFMASCNG KFDSGSGERT VKEETGEPVQ  120
QQNGFCNQPS SMVNTRSVDA GGRAPVGNSY GVMNSSDFDN SMQSQLGARN CSNLFRQSSS  180
PAGFFSHLIA ENGNTTREVD KFGTCNRKDV DAAYPSTRIG SQMNLSGHSF GSNHMPPIAE  240
EENKSIGIVG SSRHRQKANS GDRLQTDDFL NSSWDNSAMR DTKRGRDNNG RAFATSIVLE  300
TQNADSGNNI RGLAHHLSLP ISFNKDPVEK FLRFQEPVPH QIRAKRGCAT HPRSIAERMR  360
RTRISERIKK LQELFPDMDK TSTADMLELA VEYIKGLQRQ VKTLTDTKAK CTCSCSSQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818040.0LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011659461.10.0PREDICTED: transcription factor bHLH130 isoform X2
RefseqXP_011659462.10.0PREDICTED: transcription factor bHLH130 isoform X3
TrEMBLA0A0A0K9U60.0A0A0A0K9U6_CUCSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.19e-53bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]